{"id":147541,"date":"2026-09-25T12:24:00","date_gmt":"2026-09-25T16:24:00","guid":{"rendered":"https:\/\/kendallharmon.net\/?p=147541"},"modified":"2026-09-25T18:13:18","modified_gmt":"2026-09-25T22:13:18","slug":"nature-alphafold-goes-viral-database-adds-protein-complexes-of-common-viruses","status":"publish","type":"post","link":"https:\/\/kendallharmon.net\/?p=147541","title":{"rendered":"(Nature) AlphaFold \u2018goes viral\u2019: database adds protein complexes of common viruses"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\">A database of predicted structures for nearly every known protein on Earth is being upgraded to better represent some of the least-known and deadliest species: viruses.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Researchers added more than 8,000 virus protein dimers \u2014 pairs of interacting molecules \u2014 to the AlphaFold Protein Structure Database on 24 September. The resource contains predictions of the 3D structure of proteins, which are generated using the AlphaFold2 artificial-intelligence tool and made publicly available. The added proteins come from 23 virus families, all with human-infecting members, and are part of the launch of a \u2018pandemic preparedness portal\u2019 within the widely used and freely available AlphaFold database.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Earlier this year, researchers <a href=\"https:\/\/www.nature.com\/articles\/d41586-026-00787-3\">added predicted structures<\/a> for 1.7 million pairs of interacting proteins from 20 widely studied organisms, including humans, mice and tuberculosis-causing bacteria. This marked the first time that protein complexes \u2014 such as enzymes comprising two identical protein strands \u2014 had been included in the AlphaFold database, which is maintained by the European Molecular Biology Laboratory\u2019s European Bioinformatics Institute (EMBL-EBI) in Hinxton, UK.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">\u201cMany viral proteins do not act individually, they act in concert with partners,\u201d says Joe Grove, a molecular virologist at the University of Glasgow, UK, who was part of the effort to add viral complexes to the database.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/www.nature.com\/articles\/d41586-026-03022-1\">Read it all<\/a>.<\/p><blockquote class=\"twitter-tweet\"><p lang=\"en\" dir=\"ltr\">A database of predicted structures for nearly every known protein on Earth is being upgraded to better represent some of the least known and deadliest species: viruses.<br><br>Researchers added more than 8,000 virus protein dimers \u2014 pairs of interacting molecules \u2014 to the AlphaFold\u2026 <a href=\"https:\/\/t.co\/jarQwaigzD\">pic.twitter.com\/jarQwaigzD<\/a><\/p>&mdash; Flavian (@bullish1312) <a href=\"https:\/\/x.com\/bullish1312\/status\/2103500559688863774?ref_src=twsrc%5Etfw\">September 25, 2026<\/a><\/blockquote> <script async src=\"https:\/\/platform.x.com\/widgets.js\" charset=\"utf-8\"><\/script>\n","protected":false},"excerpt":{"rendered":"<p>A database of predicted structures for nearly every known protein on Earth is being upgraded to better represent some of the least-known and deadliest species: viruses. Researchers added more than 8,000 virus protein dimers \u2014 pairs of interacting molecules \u2014<span class=\"ellipsis\">&hellip;<\/span><\/p>\n<div class=\"read-more\"><a href=\"https:\/\/kendallharmon.net\/?p=147541\">Read more &#8250;<\/a><\/div>\n<p><!-- end of .read-more --><\/p>\n","protected":false},"author":794,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[104,95],"tags":[],"class_list":["post-147541","post","type-post","status-publish","format-standard","hentry","category-health-medicine","category-science-technology"],"_links":{"self":[{"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/posts\/147541","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/users\/794"}],"replies":[{"embeddable":true,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=147541"}],"version-history":[{"count":3,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/posts\/147541\/revisions"}],"predecessor-version":[{"id":147544,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=\/wp\/v2\/posts\/147541\/revisions\/147544"}],"wp:attachment":[{"href":"https:\/\/kendallharmon.net\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=147541"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=147541"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/kendallharmon.net\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=147541"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}