The denomination’s path has not been without conflict: in 2010, the Anglican Mission in America (AMIA), a founding organization of ACNA and part of the Anglican Church of Rwanda, announced it was transitioning to “missionary partner” ”“ a lower level of affiliation with ACNA. Eighteen months later, the AMIA experienced a crisis when its officials unilaterally severed their connection with the Rwandan church, forfeiting ACNA missionary partner status. The dispute was partly resolved when two-thirds of AMIA congregations opted to affiliate with ACNA by directly joining its dioceses or through a new Rwandan-sponsored missionary jurisdiction. The remaining third of AMIA congregations recast themselves as a mission society with connections to the Anglican Church of Congo.
Many ACNA congregations that departed the Episcopal Church have also endured litigation over disputed church properties with their former denomination. While Duncan has acknowledged the pain of the past split for many congregations and the difficulty of contentious litigation, he has encouraged congregations to prioritize evangelism and not to dwell on past disputes.